Topic: Population scale sequencing
Discussion Leader: Louis
Paper: Lamichhaney et al. 2013
Showing posts with label NGS. Show all posts
Showing posts with label NGS. Show all posts
Tuesday, April 9, 2013
Tuesday, March 26, 2013
Wednesday, March 6, 2013
March 13, 2013
Topic: Single molecule bar-coding in RNAseq
Discussion leader: Douglas
Paper: Shiroguchi_2012
Supplementary paper: Fu et al. 2011
Discussion Questions
Wednesday, February 27, 2013
March 6, 2013
Topic: Detecting selection signatures from pooled samples
Discussion leader: Sergio
Paper: Boitard 2013
Discussion Questions
Follow-up paper: Li et al. 2012
Tuesday, February 26, 2013
Feb. 27, 2013
Topic: Long non-coding RNAs
Discussion leader: Christina
Papers: Sigova et al. 2013
Supplementary data
Discussion questions
Thursday, November 1, 2012
Nov. 5, 2012
Topic: Transcriptome assembly
Discussion leader: Yash
Papers: Martin and Wang 2011
Sun et al. 2012
Discussion questions
Friday, September 14, 2012
Sept. 17, 2012
Topic: Quality filtering NGS data
Discussion leader: Beth
Papers: Dohm et al. 2008
Kircher et al. 2011
Discussion Questions
Software: FastQC
Datasets: Illumina reads 1, Illumina reads 2
Artifacts of random hexamer priming at 5' read ends
Note: Download and install FastQC on your computer. I'll be posting some Illumina read sets for you to quality-check, and we'll discuss the results on Monday. -Christina
Saturday, September 8, 2012
Sept. 3, 2012
Discussion leader: Kristine
Papers: Metzker et al 2010
Hudson 2008
Discussion questions
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